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HuGE Navigator|Phenopedia|PHGKB

Phenopedia


Cleft Palate
572 genes has been reported with Cleft Palate
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Associated Gene
Total Publication
Meta-analysis Publication
    NHLH1 Genopedia 92 16
    IRF6 Genopedia 76 7
    MTHFR Genopedia 52 7
    MSX1 Genopedia 30 1
    TGFA Genopedia 29 2
    TGFB3 Genopedia 26 0
    FOXE1 Genopedia 23 4
    BMP4 Genopedia 21 2
    MAFB Genopedia 18 1
    VAX1 Genopedia 15 1
    PAX7 Genopedia 14 1
    MTRR Genopedia 13 3
    ABCA4 Genopedia 13 2
    MTR Genopedia 13 2
    PVRL1 Genopedia 13 0
    CRISPLD2 Genopedia 11 1
    BHMT Genopedia 11 0
    MTHFD1 Genopedia 11 1
    CBS Genopedia 11 0
    SUMO1 Genopedia 11 0
    BHMT2 Genopedia 10 0
    ARHGAP29 Genopedia 10 0
    BCL3 Genopedia 9 0
    WNT3 Genopedia 9 1
    GRHL3 Genopedia 9 0
    CDH1 Genopedia 9 0
    FGFR1 Genopedia 9 0
    JAG2 Genopedia 8 0
    TCN2 Genopedia 8 2
    PAX9 Genopedia 8 0
    NTN1 Genopedia 8 1
    RARA Genopedia 8 0
    COTL1 Genopedia 7 0
    TBX22 Genopedia 7 0
    NAT2 Genopedia 7 0
    CEBPB Genopedia 7 1
    GREM1 Genopedia 7 0
    SATB2 Genopedia 7 1
    SPRY2 Genopedia 7 1
    SKI Genopedia 6 0
    WNT9B Genopedia 6 0
    CLPTM1 Genopedia 6 0
    FGF10 Genopedia 6 0
    AXIN2 Genopedia 6 0
    TBX10 Genopedia 6 0
    WNT5A Genopedia 6 0
    SLC19A1 Genopedia 6 0
    MTHFS Genopedia 5 0
    MSX2 Genopedia 5 0
    NAT1 Genopedia 5 0
    WNT3A Genopedia 5 0
    TP63 Genopedia 5 1
    GSTM1 Genopedia 5 0
    GLI2 Genopedia 5 0
    GABRB3 Genopedia 5 0
    GSTT1 Genopedia 5 0
    TYMS Genopedia 5 0
    RFC1 Genopedia 5 0
    FGFR2 Genopedia 5 0
    DMGDH Genopedia 5 0
    SMG1 Genopedia 5 1
    KIAA1598 Genopedia 5 2
    MMP3 Genopedia 5 0
    FOLR2 Genopedia 4 0
    RUNX2 Genopedia 4 0
    TCOF1 Genopedia 4 0
    WNT10A Genopedia 4 0
    MYH9 Genopedia 4 0
    MTHFD2 Genopedia 4 0
    GSTP1 Genopedia 4 0
    TNF Genopedia 4 1
    COL2A1 Genopedia 4 0
    SHH Genopedia 4 0
    LHX8 Genopedia 4 0
    CTNNB1 Genopedia 4 0
    BMP2 Genopedia 4 0
    TFAP2A Genopedia 4 0
    TIMP2 Genopedia 4 0
    FGF1 Genopedia 4 0
    FOLR1 Genopedia 4 0
    MAT2A Genopedia 3 0
    PVRL2 Genopedia 3 0
    ALDH1L1 Genopedia 3 0
    CREBBP Genopedia 3 0
    PDGFRA Genopedia 3 0
    NOS3 Genopedia 3 0
    EDN1 Genopedia 3 0
    EPHX1 Genopedia 3 0
    FGF2 Genopedia 3 0
    FGF12 Genopedia 3 0
    DHFR Genopedia 3 0
    PON1 Genopedia 3 0
    WNT11 Genopedia 3 0
    SHMT1 Genopedia 3 0
    PTCH1 Genopedia 3 0
    CYP1A1 Genopedia 3 0
    SNAI1 Genopedia 3 0
    TPM1 Genopedia 3 0
    FGF8 Genopedia 3 0
    RYK Genopedia 3 0
    PDGFC Genopedia 3 0
    TGFB1 Genopedia 3 0
    GNMT Genopedia 3 0
    THADA Genopedia 3 1
    TGFBR1 Genopedia 3 0
    NOG Genopedia 3 0
    AHCY Genopedia 3 0
    CPO Genopedia 2 1
    CP Genopedia 2 0
    GJA1 Genopedia 2 0
    NR3C1 Genopedia 2 0
    GSK3B Genopedia 2 0
    FGF9 Genopedia 2 0
    PITX2 Genopedia 2 0
    BRCA1 Genopedia 2 0
    ACTN1 Genopedia 2 0
    MYC Genopedia 2 0
    WNT5B Genopedia 2 0
    TBX1 Genopedia 2 0
    PCYT1A Genopedia 2 0
    COL11A1 Genopedia 2 0
    CTH Genopedia 2 0
    MMP2 Genopedia 2 0
    DVL2 Genopedia 2 0
    STX18 Genopedia 2 0
    MAT1A Genopedia 2 0
    CCDC26 Genopedia 2 0
    MAT2B Genopedia 2 0
    WNT8A Genopedia 2 0
    AXIN1 Genopedia 2 0
    TIMP3 Genopedia 2 0
    FOXF2 Genopedia 2 0
    CHKA Genopedia 2 0
    GAD1 Genopedia 2 0
    EVC Genopedia 2 0
    CALML3 Genopedia 2 2
    TGFBR2 Genopedia 2 0
    OFC1 Genopedia 2 1
    PTCH2 Genopedia 2 0
    MMP13 Genopedia 2 0
    LEFTY2 Genopedia 2 0
    PAX6 Genopedia 2 0
    FAM49A Genopedia 2 0
    EGFR Genopedia 2 0
    KRT18 Genopedia 2 1
    FOLH1 Genopedia 2 0
    FGFBP1 Genopedia 2 0
    DNTT Genopedia 2 0
    FGF4 Genopedia 2 0
    ROR2 Genopedia 2 0
    DIEXF Genopedia 2 0
    GLI3 Genopedia 2 0
    VCL Genopedia 2 0
    WNT6 Genopedia 2 0
    COL11A2 Genopedia 2 0
    DLX1 Genopedia 2 0
    GTPBP4 Genopedia 2 0
    MMP9 Genopedia 2 0
    APC Genopedia 2 0
    FOLR3 Genopedia 2 0
    FTCD Genopedia 2 0
    JARID2 Genopedia 2 0
    SDC2 Genopedia 2 0
    PRDM16 Genopedia 2 0
    FGF3 Genopedia 2 0
    PEMT Genopedia 2 0
    DLX4 Genopedia 2 0
    HIF1A Genopedia 2 0
    GJB2 Genopedia 2 0
    FGF18 Genopedia 2 0
    TTF2 Genopedia 2 0
    DLX2 Genopedia 2 0
    NBN Genopedia 2 0
    RHPN2 Genopedia 2 0
    PAX3 Genopedia 2 0
    CHDH Genopedia 2 0
    ADCY9 Genopedia 2 0
    UNQ1887 Genopedia 1 0
    DCAF4L2 Genopedia 1 1
    DLX5 Genopedia 1 0
    DMD Genopedia 1 0
    EPHB2 Genopedia 1 0
    EPHB3 Genopedia 1 0
    ETV5 Genopedia 1 0
    Ift88 Genopedia 1 0
    FBN2 Genopedia 1 0
    MKX Genopedia 1 0
    GRID2 Genopedia 1 1
    GRLF1 Genopedia 1 0
    HOXB6 Genopedia 1 0
    ITGB3 Genopedia 1 0
    LOR Genopedia 1 0
    SMAD1 Genopedia 1 0
    BARX1 Genopedia 1 0
    MIB1 Genopedia 1 0
    FLNB Genopedia 1 0
    CDKN1C Genopedia 1 0
    CDSN Genopedia 1 0
    WNT7B Genopedia 1 0
    ZNF189 Genopedia 1 0
    FUZ Genopedia 1 0
    KREMEN1 Genopedia 1 0
    CSMD1 Genopedia 1 0
    SHMT2 Genopedia 1 0
    SIX3 Genopedia 1 0
    SUMO3 Genopedia 1 0
    SOX5 Genopedia 1 0
    SPP1 Genopedia 1 0
    TNFRSF10B Genopedia 1 0
    MSC Genopedia 1 0
    NRXN2 Genopedia 1 0
    HAND2 Genopedia 1 0
    NNMT Genopedia 1 0
    PIPOX Genopedia 1 0
    UGT1A7 Genopedia 1 0
    STK32B Genopedia 1 0
    HEMGN Genopedia 1 0
    IFNK Genopedia 1 0
    SALL4 Genopedia 1 0
    RET Genopedia 1 0
    MMP25 Genopedia 1 0
    MYH14 Genopedia 1 0
    FZD1 Genopedia 1 0
    SMO Genopedia 1 0
    SOD1 Genopedia 1 0
    SOD2 Genopedia 1 0
    SOX1 Genopedia 1 0
    STAT3 Genopedia 1 0
    ESR1 Genopedia 1 0
    IQSEC2 Genopedia 1 0
    CKM Genopedia 1 0
    CCR1 Genopedia 1 0
    PRPF31 Genopedia 1 0
    GCH1 Genopedia 1 0
    FOXP1 Genopedia 1 0
    SLC39A3 Genopedia 1 0
    NRG1 Genopedia 1 1
    HOXA7 Genopedia 1 0
    HSP90AA1 Genopedia 1 0
    INHBA Genopedia 1 0
    LIPC Genopedia 1 0
    LMX1B Genopedia 1 0
    TAG Genopedia 1 0
    MIR140 Genopedia 1 0
    MID1 Genopedia 1 0
    MRE11A Genopedia 1 0
    GABBR2 Genopedia 1 0
    MT1A Genopedia 1 0
    MT4 Genopedia 1 0
    BARX2 Genopedia 1 0
    GLB1L2 Genopedia 1 0
    CASR Genopedia 1 0
    LOXL3 Genopedia 1 0
    TP73L Genopedia 1 1
    SERPINA6 Genopedia 1 0
    FOXP2 Genopedia 1 0
    BMPR1B Genopedia 1 0
    SPAM1 Genopedia 1 0
    TGFB2 Genopedia 1 0
    THRB Genopedia 1 0
    UFD1L Genopedia 1 0
    ZNF236 Genopedia 1 0
    ADAMTS20 Genopedia 1 0
    GLRB Genopedia 1 0
    AMT Genopedia 1 0
    PRTG Genopedia 1 0
    APOE Genopedia 1 0
    MTHFD1L Genopedia 1 0
    EPHA3 Genopedia 1 0
    DHCR24 Genopedia 1 0
    FN1 Genopedia 1 0
    CDH2 Genopedia 1 0
    SET Genopedia 1 0
    CCL2 Genopedia 1 0
    WNT4 Genopedia 1 0
    PON2 Genopedia 1 0
    CHD7 Genopedia 1 0
    PVR Genopedia 1 0
    RARB Genopedia 1 0
    KRT14 Genopedia 1 0
    LCAT Genopedia 1 0
    MEOX2 Genopedia 1 0
    MMP14 Genopedia 1 0
    ASL Genopedia 1 0
    NPY Genopedia 1 0
    GEMIN4 Genopedia 1 0
    MYL2 Genopedia 1 0
    ALX3 Genopedia 1 0
    BAMBI Genopedia 1 0
    NIPBL Genopedia 1 0
    SALL3 Genopedia 1 0
    ERCC4 Genopedia 1 0
    ESRRG Genopedia 1 0
    ALDH1A1 Genopedia 1 0
    SP8 Genopedia 1 0
    ZNF385B Genopedia 1 0
    DEFB1 Genopedia 1 0
    DLX3 Genopedia 1 0
    SHFM3 Genopedia 1 0
    IRF9 Genopedia 1 0
    SPTLC1 Genopedia 1 0
    SMC2 Genopedia 1 0
    APEX1 Genopedia 1 0
    PITX1 Genopedia 1 0
    PRRX1 Genopedia 1 0
    SLC2A9 Genopedia 1 0
    CEACAM19 Genopedia 1 0
    PTPRS Genopedia 1 0
    FKBP5 Genopedia 1 0
    HIC1 Genopedia 1 0
    WDR1 Genopedia 1 0
    MMEL1 Genopedia 1 0
    RAD51 Genopedia 1 0
    RPL11 Genopedia 1 0
    BLM Genopedia 1 0
    SOD3 Genopedia 1 0
    SOX4 Genopedia 1 0
    SOX9 Genopedia 1 0
    ATM Genopedia 1 0
    OGG1 Genopedia 1 0
    RPS24 Genopedia 1 0
    SALL1 Genopedia 1 0
    SC5DL Genopedia 1 0
    GOLGB1 Genopedia 1 0
    TBK1 Genopedia 1 0
    APOA1 Genopedia 1 0
    LDLR Genopedia 1 0
    LIMK1 Genopedia 1 0
    ARNT Genopedia 1 0
    GABRA6 Genopedia 1 0
    SYT14 Genopedia 1 0
    TANC2 Genopedia 1 0
    GDF1 Genopedia 1 0
    Msx1 Genopedia 1 1
    E2F1 Genopedia 1 0
    FGF5 Genopedia 1 0
    CYP2A6 Genopedia 1 0
    DHCR7 Genopedia 1 0
    DLG1 Genopedia 1 0
    MIR1255A Genopedia 1 0
    SPRY1 Genopedia 1 0
    LEFTY1 Genopedia 1 0
    GADD45G Genopedia 1 1
    DDX20 Genopedia 1 0
    FILIP1L Genopedia 1 1
    APOA1BP Genopedia 1 0
    WNT7A Genopedia 1 0
    BRIP1 Genopedia 1 0
    SNX3 Genopedia 1 0
    IKBKE Genopedia 1 0
    SUMO2 Genopedia 1 0
    FSCN1 Genopedia 1 0
    BRCA2 Genopedia 1 0
    TCF12 Genopedia 1 0
    TGFBR3 Genopedia 1 0
    TWIST1 Genopedia 1 0
    MARK4 Genopedia 1 0
    GSTA4 Genopedia 1 0
    ISL1 Genopedia 1 0
    MAOA Genopedia 1 0
    FGFR4 Genopedia 1 0
    FOXC2 Genopedia 1 0
    PVRL3 Genopedia 1 0
    POMT1 Genopedia 1 0
    RAI1 Genopedia 1 0
    CHRNA4 Genopedia 1 0
    OSR2 Genopedia 1 0
    COL8A1 Genopedia 1 1
    CRMP1 Genopedia 1 0
    RBFOX3 Genopedia 1 1
    ZNF714 Genopedia 1 0
    DSP Genopedia 1 0
    EYA1 Genopedia 1 0
    PRRX2 Genopedia 1 0
    PON3 Genopedia 1 0
    DGCR8 Genopedia 1 0
    XRCC1 Genopedia 1 0
    XRCC3 Genopedia 1 0
    SLC30A4 Genopedia 1 0
    TRIM8 Genopedia 1 0
    PIWIL1 Genopedia 1 0
    ARHGEF10 Genopedia 1 0
    TBX15 Genopedia 1 0
    TCF21 Genopedia 1 0
    GDF6 Genopedia 1 0
    LPL Genopedia 1 0
    MIR146A Genopedia 1 0
    SMAD2 Genopedia 1 0
    ESRRB Genopedia 1 0
    MECOM Genopedia 1 0
    HSD11B2 Genopedia 1 0
    GAD2 Genopedia 1 0
    GLRA2 Genopedia 1 0
    DROSHA Genopedia 1 0
    GSK3A Genopedia 1 0
    GDF11 Genopedia 1 0
    CETP Genopedia 1 0
    FZD10 Genopedia 1 0
    COMT Genopedia 1 0
    CYP1A2 Genopedia 1 0
    NQO1 Genopedia 1 0
    EGF Genopedia 1 0
    PPIG Genopedia 1 0
    ZEB2 Genopedia 1 0
    ATR Genopedia 1 0
    TNS1 Genopedia 1 0
    CCT3 Genopedia 1 0
    TRIO Genopedia 1 0
    MN1 Genopedia 1 0
    ATIC Genopedia 1 0
    NOTCH3 Genopedia 1 0
    ROR1 Genopedia 1 0
    XPO5 Genopedia 1 0
    RARG Genopedia 1 0
    RXRG Genopedia 1 0
    BMP7 Genopedia 1 0
    TCN1 Genopedia 1 0
    FZD7 Genopedia 1 0
    CRISPLD1 Genopedia 1 0
    PAFAH1B1 Genopedia 1 0
    PEX7 Genopedia 1 0
    PTEN Genopedia 1 0
    RPL35A Genopedia 1 0
    SLC6A4 Genopedia 1 0
    SNAI2 Genopedia 1 0
    ADAM17 Genopedia 1 0
    MIR552 Genopedia 1 0
    TNNT3 Genopedia 1 0
    TNP1 Genopedia 1 0
    TULP3 Genopedia 1 0
    WHSC1 Genopedia 1 0
    BAALC Genopedia 1 0
    FGF7 Genopedia 1 0
    DKK1 Genopedia 1 0
    RAD50 Genopedia 1 0
    CHL1 Genopedia 1 0
    FOXN3 Genopedia 1 0
    GART Genopedia 1 0
    SMAD3 Genopedia 1 0
    C1QTNF3 Genopedia 1 0
    ADH1A Genopedia 1 0
    CRHR1 Genopedia 1 0
    CYP1B1 Genopedia 1 0
    CYP3A7 Genopedia 1 0
    DLX6 Genopedia 1 0
    ABCA1 Genopedia 1 0
    EGR3 Genopedia 1 0
    CUX2 Genopedia 1 0
    PITPNC1 Genopedia 1 0
    SLC39A1 Genopedia 1 0
    GSTM3 Genopedia 1 0
    TBX21 Genopedia 1 0
    ACACB Genopedia 1 0
    IDH1 Genopedia 1 0
    KIF7 Genopedia 1 0
    MAF Genopedia 1 1
    MLLT3 Genopedia 1 0
    LEF1 Genopedia 1 0
    PDGFA Genopedia 1 0
    POU5F1 Genopedia 1 0
    BSPRY Genopedia 1 0
    CDKAL1 Genopedia 1 0
    SAR1A Genopedia 1 0
    BACH1 Genopedia 1 0
    RPL5 Genopedia 1 0
    RPS17 Genopedia 1 0
    SALL2 Genopedia 1 0
    SLCO1B1 Genopedia 1 0
    TBX5 Genopedia 1 0
    ADH1C Genopedia 1 0
    CRABP1 Genopedia 1 0
    CYP2E1 Genopedia 1 0
    C14orf49 Genopedia 1 0
    ESR2 Genopedia 1 0
    FGFR3 Genopedia 1 0
    FOXH1 Genopedia 1 0
    FRAS1 Genopedia 1 0
    TRAF6 Genopedia 1 0
    CRELD1 Genopedia 1 0
    SLC7A5 Genopedia 1 0
    AP2B1 Genopedia 1 0
    ZNF431 Genopedia 1 0
    JAG1 Genopedia 1 0
    COL4A4 Genopedia 1 0
    FST Genopedia 1 0
    APOA5 Genopedia 1 0
    ADH1B Genopedia 1 0
    INHBB Genopedia 1 0
    AR Genopedia 1 0
    SMAD4 Genopedia 1 0
    AHCYL2 Genopedia 1 0
    DICER1 Genopedia 1 0
    FZD2 Genopedia 1 0
    MLH1 Genopedia 1 0
    MMP1 Genopedia 1 0
    PAH Genopedia 1 0
    C9orf156 Genopedia 1 0
    ABCB1 Genopedia 1 0
    CFC1 Genopedia 1 0
    AHRR Genopedia 1 0
    RPS19 Genopedia 1 0
    SULT1A1 Genopedia 1 0
    TRPS1 Genopedia 1 0
    ERCC2 Genopedia 1 0
    F13A1 Genopedia 1 0
    VAX2 Genopedia 1 0
    B3GAT1 Genopedia 1 0
    HYAL1 Genopedia 1 0
    APOC2 Genopedia 1 0
    KCNJ2 Genopedia 1 0
    OR6B2 Genopedia 1 0
    MIR143 Genopedia 1 0
    ARVCF Genopedia 1 0
    CHUK Genopedia 1 0
    PRR20A Genopedia 1 0
    CCR6 Genopedia 1 0
    TNIP1 Genopedia 1 0
    SLC25A13 Genopedia 1 0
    DCAF7 Genopedia 1 0
    MSH2 Genopedia 1 0
    ASS1 Genopedia 1 0
    DVL1 Genopedia 1 0
    N4BP2 Genopedia 1 0
    SHROOM3 Genopedia 1 1
    TCEB3 Genopedia 1 0
    HNF1A Genopedia 1 0
    BMPR2 Genopedia 1 0
    ALX4 Genopedia 1 0
    RORA Genopedia 1 0
    TGIF1 Genopedia 1 0
    SLC30A1 Genopedia 1 0
    PAX8 Genopedia 1 0
    SCD5 Genopedia 1 0
    FZD8 Genopedia 1 0
    ACVR1 Genopedia 1 0
    TBX4 Genopedia 1 0
    ARNT2 Genopedia 1 0
    FZD4 Genopedia 1 0
    FOXN1 Genopedia 1 0
    OFD1 Genopedia 1 0
    PIAS1 Genopedia 1 0
    NTRK1 Genopedia 1 0
    AIP Genopedia 1 0
    PIAS2 Genopedia 1 0
    SH3PXD2A Genopedia 1 0
    FGF19 Genopedia 1 0
    PKP1 Genopedia 1 0
    TULP4 Genopedia 1 0
    PTPN11 Genopedia 1 0
    SLC30A5 Genopedia 1 0
    BMP6 Genopedia 1 0
    BMPR1A Genopedia 1 0
    MICA Genopedia 1 0
    MSH6 Genopedia 1 0
    APOB Genopedia 1 0
    BMP10 Genopedia 1 0
    ANK3 Genopedia 1 0
    SLC7A11 Genopedia 1 0
    CYP2D6 Genopedia 1 0
    SLC26A2 Genopedia 1 0
    EVC2 Genopedia 1 0
    AHR Genopedia 1 0
    ELAVL2 Genopedia 1 1
    EMX2 Genopedia 1 0
    EPS15 Genopedia 1 0
    RIPK3 Genopedia 1 0
    SLC46A1 Genopedia 1 0
    MRPL53 Genopedia 1 0
    TPH2 Genopedia 1 0
    ADH4 Genopedia 1 0
    ADH5 Genopedia 1 0
    COL4A3 Genopedia 1 0
Note: The number of publications displayed in this table will differ from the number displayed in the HuGE Literature Finder as the number in Phenopedia reflects only the indexed disease term, but the number in the HuGE Literature Finder reflects all text searches of the disease term including the indexed term.
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